If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ), 'gf_id' => 'HOM05D000806', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000806' ), 'data_identifier' => 'HOM05D000806', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000806', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '82' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p23170' => 'bna', 'A06p23190' => 'bna', 'Aa31sc334G20' => 'aar', 'Ah.01g021370' => 'amhyb', 'Ah.02g120710' => 'amhyb', 'Ah.03g144230' => 'amhyb', 'Ah.03g144240' => 'amhyb', 'Ah.09g227360' => 'amhyb', 'Ah.10g027160' => 'amhyb', 'Ah.10g027380' => 'amhyb', 'Ah.10g027510' => 'amhyb', 'Ah.10g027920' => 'amhyb', 'Ah.10g028630' => 'amhyb', 'Ah.10g028930' => 'amhyb', 'AL2G20662' => 'aly', 'AL2G20666' => 'aly', 'AL2G20668' => 'aly', 'AL2G21530' => 'aly', 'AL2G21550' => 'aly', 'AL2G21570' => 'aly', 'arahy.Tifrunner.gnm1.ann1.15M9SP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WU3U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41GV7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48ICNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66QNKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V23H5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG95Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6F9B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP88CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4M97S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MXT580' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJQ568' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGR4IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y8HZNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEGK0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJGE71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0BJS7' => 'arhy', 'ATCG00500' => 'ath', 'ATCG00520' => 'ath', 'ATCG00540' => 'ath', 'ATR0165G011' => 'atr', 'ATR0303G007' => 'atr', 'ATR1137G001' => 'atr', 'Atru.chr3.2991' => 'acertr', 'AUR62004684' => 'cqu', 'AUR62006476' => 'cqu', 'AUR62011157' => 'cqu', 'AUR62023874' => 'cqu', 'AUR62028418' => 'cqu', 'AUR62032522' => 'cqu', 'AUR62041919' => 'cqu', 'AUR62042261' => 'cqu', 'BcaB01g03056' => 'bca', 'BcaC03g15271' => 'bca', 'BcaC04g21638' => 'bca', 'BcaC07g41837' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00220' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00150' => 'bna', 'BolC2t08571H' => 'bol', 'BolC8t49073H' => 'bol', 'BolC8t52428H' => 'bol', 'BolC9t55819H' => 'bol', 'BolC9t55821H' => 'bol', 'BolC9t56915H' => 'bol', 'BolC9t56916H' => 'bol', 'BolC9t58296H' => 'bol', 'BolSC29t60465H' => 'bol', 'BolSC29t60467H' => 'bol', 'BolSC29t60468H' => 'bol', 'BolSC29t60587H' => 'bol', 'BolSC29t60589H' => 'bol', 'BolSC29t60591H' => 'bol', 'BolSC35t60644H' => 'bol', 'BolSC35t60646H' => 'bol', 'BolSC35t60648H' => 'bol', 'BolSC35t60649H' => 'bol', 'BolSC35t60748H' => 'bol', 'BolSC35t60750H' => 'bol', 'BolSC35t60752H' => 'bol', 'BolSC45t60951H' => 'bol', 'BolSC46t60998H' => 'bol', 'BolSC46t61000H' => 'bol', 'BolSC46t61033H' => 'bol', 'BolSC46t61035H' => 'bol', 'BolSC46t61037H' => 'bol', 'BolSC47t61095H' => 'bol', 'BolSC47t61097H' => 'bol', 'BolSC47t61099H' => 'bol', 'BolSC47t61125H' => 'bol', 'BolSC49t61181H' => 'bol', 'BolSC49t61183H' => 'bol', 'BolSC49t61185H' => 'bol', 'BraA06t25421Z' => 'bra', 'BraA06t25423Z' => 'bra', 'BraA10t43926Z' => 'bra', 'BraSC103t45464Z' => 'bra', 'BraSC103t45466Z' => 'bra', 'BraSC103t45468Z' => 'bra', 'BraSC138t45574Z' => 'bra', 'BraSC140t45575Z' => 'bra', 'BraSC25t45846Z' => 'bra', 'BraSC25t45848Z' => 'bra', 'BraSC25t45864Z' => 'bra', 'BraSC25t45866Z' => 'bra', 'BraSC25t45868Z' => 'bra', 'BraSC58t46420Z' => 'bra', 'BraSC58t46422Z' => 'bra', 'BraSC59t46589Z' => 'bra', 'BraSC59t46591Z' => 'bra', 'BraSC59t46593Z' => 'bra', 'C02p24800' => 'bna', 'C02p28660' => 'bna', 'C02p43520' => 'bna', 'C02p43540' => 'bna', 'C09p29580' => 'bna', 'C09p29600' => 'bna', 'C09p40220' => 'bna', 'C09p40230' => 'bna', 'C09p40250' => 'bna', 'CAN.G1.10' => 'can', 'CAN.G1007.1' => 'can', 'CAN.G1012.2' => 'can', 'CAN.G1012.3' => 'can', 'CAN.G1012.4' => 'can', 'CAN.G1163.7' => 'can', 'CAN.G1183.2' => 'can', 'CAN.G1183.3' => 'can', 'CAN.G129.11' => 'can', 'CAN.G1478.2' => 'can', 'CAN.G1478.9' => 'can', 'CAN.G1693.6' => 'can', 'CAN.G1741.4' => 'can', 'CAN.G1897.7' => 'can', 'CAN.G232.10' => 'can', 'CAN.G3.24' => 'can', 'CAN.G3.25' => 'can', 'CAN.G431.5' => 'can', 'CAN.G445.6' => 'can', 'CAN.G505.23' => 'can', 'CAN.G653.1' => 'can', 'CAN.G793.44' => 'can', 'CAN.G864.7' => 'can', 'CAN.G88.2' => 'can', 'CAN.G999.42' => 'can', 'CARHR116850' => 'chi', 'CARHR116860' => 'chi', 'CARHR282090' => 'chi', 'CARHR282100' => 'chi', 'CARHR282120' => 'chi', 'Ca_28342_v3' => 'car', 'Ca_31113_v3' => 'car', 'Cc00_g01670' => 'ccan', 'Cc06_g18130' => 'ccan', 'Cc07_g17490' => 'ccan', 'Cc11_g02210' => 'ccan', 'Cc11_g06100' => 'ccan', 'CDE02G1301' => 'cde', 'CDE02G2600' => 'cde', 'CDE02G3015' => 'cde', 'CDE06G0906' => 'cde', 'Cfa021575' => 'cfa', 'CiPaw.05G175100' => 'cil', 'CiPaw.09G163000' => 'cil', 'CiPaw.10G123500' => 'cil', 'ClCG01G001030' => 'cla', 'ClCG01G013630' => 'cla', 'ClCG06G008920' => 'cla', 'COL.COLO4_00488' => 'col', 'COL.COLO4_02337' => 'col', 'Cpa.g.sc0.171' => 'cpa', 'Cpa.g.sc120.42' => 'cpa', 'Cre12.g484000' => 'cre', 'CsaV3_UNG209270' => 'csa', 'CSS0050017' => 'camsi', 'DCAR_032493' => 'dca', 'DCAR_032495' => 'dca', 'DCAR_032497' => 'dca', 'Dinv35276' => 'din', 'Duzib198G0003' => 'dzi', 'ECA074G0009' => 'eca', 'ECA077G0001' => 'eca', 'ECA236G1817' => 'eca', 'ECA236G2416' => 'eca', 'EL10Ac2g02706' => 'bvu', 'EL10Ac2g03065' => 'bvu', 'EL10Ac4g09266' => 'bvu', 'EL10Ac4g10120' => 'bvu', 'EL10Ac6g15047' => 'bvu', 'EL10Ac9g20703' => 'bvu', 'EL10Ac9g20925' => 'bvu', 'EL10As12g24027' => 'bvu', 'EL10As15g24116' => 'bvu', 'EL10As15g24117' => 'bvu', 'EL10As15g24119' => 'bvu', 'EL10As15g24128' => 'bvu', 'EL10As1g23054' => 'bvu', 'Eucgr.E01113' => 'egr', 'Eucgr.E02606' => 'egr', 'Eucgr.E02608' => 'egr', 'Eucgr.E02609' => 'egr', 'Eucgr.I02537' => 'egr', 'Eucgr.I02538' => 'egr', 'Eucgr.I02540' => 'egr', 'FAN07G1499' => 'fan', 'FAN17G0466' => 'fan', 'Glyma.05G124400' => 'gma', 'Glyma.12G232900' => 'gma', 'Glyma.14G104750' => 'gma', 'Glyma.15G248500' => 'gma', 'Gohir.1Z049999' => 'ghi', 'Gohir.1Z050266' => 'ghi', 'Gohir.A05G086325' => 'ghi', 'Gohir.A07G134850' => 'ghi', 'Gohir.A07G163654' => 'ghi', 'Gohir.A07G163672' => 'ghi', 'Gohir.A07G163690' => 'ghi', 'Gohir.A07G166934' => 'ghi', 'Gohir.A07G167012' => 'ghi', 'Gohir.A08G085042' => 'ghi', 'Gohir.A09G101966' => 'ghi', 'Gohir.A09G103166' => 'ghi', 'Gohir.A11G156733' => 'ghi', 'Gohir.A12G124900' => 'ghi', 'Gohir.D01G101891' => 'ghi', 'Gohir.D01G102333' => 'ghi', 'Gohir.D03G095350' => 'ghi', 'Gohir.D04G084920' => 'ghi', 'Gohir.D04G104036' => 'ghi', 'Gohir.D04G104048' => 'ghi', 'Gohir.D04G129256' => 'ghi', 'Gohir.D04G129284' => 'ghi', 'Gohir.D06G105300' => 'ghi', 'Gohir.D07G027350' => 'ghi', 'Gohir.D10G105733' => 'ghi', 'Gohir.D11G225901' => 'ghi', 'Gohir.D11G226001' => 'ghi', 'Gohir.D12G087401' => 'ghi', 'Gohir.D13G043800' => 'ghi', 'Gohir.D13G123550' => 'ghi', 'Gorai.001G028500' => 'gra', 'Gorai.001G212300' => 'gra', 'Gorai.003G066100' => 'gra', 'Gorai.003G099600' => 'gra', 'Gorai.004G061100' => 'gra', 'Gorai.004G276900' => 'gra', 'Gorai.004G277000' => 'gra', 'Gorai.005G127400' => 'gra', 'Gorai.007G243500' => 'gra', 'Gorai.007G243600' => 'gra', 'Gorai.011G115400' => 'gra', 'Gorai.011G237000' => 'gra', 'Gorai.012G094700' => 'gra', 'Gorai.012G112600' => 'gra', 'Gorai.012G112700' => 'gra', 'Gorai.012G151800' => 'gra', 'Gorai.013G138600' => 'gra', 'GSVIVG01013928001' => 'vvi', 'GSVIVG01015185001' => 'vvi', 'GSVIVG01030619001' => 'vvi', 'HanXRQChr00c0702g0576831' => 'han', 'HanXRQChr00c0759g0577191' => 'han', 'HanXRQChr01g0020341' => 'han', 'HanXRQChr01g0020361' => 'han', 'HanXRQChr01g0020371' => 'han', 'HanXRQChr02g0038641' => 'han', 'HanXRQChr02g0041561' => 'han', 'HanXRQChr02g0041571' => 'han', 'HanXRQChr02g0041581' => 'han', 'HanXRQChr02g0044881' => 'han', 'HanXRQChr02g0044901' => 'han', 'HanXRQChr02g0044911' => 'han', 'HanXRQChr05g0161181' => 'han', 'HanXRQChr08g0210341' => 'han', 'HanXRQChr08g0210351' => 'han', 'HanXRQChr09g0257581' => 'han', 'HanXRQChr09g0267831' => 'han', 'HanXRQChr10g0283541' => 'han', 'HanXRQChr10g0283551' => 'han', 'HanXRQChr10g0283571' => 'han', 'HanXRQChr10g0284231' => 'han', 'HanXRQChr10g0284241' => 'han', 'HanXRQChr10g0284261' => 'han', 'HanXRQChr10g0287881' => 'han', 'HanXRQChr10g0289251' => 'han', 'HanXRQChr10g0289261' => 'han', 'HanXRQChr10g0289281' => 'han', 'HanXRQChr10g0318181' => 'han', 'HanXRQChr10g0318201' => 'han', 'HanXRQChr10g0318211' => 'han', 'HanXRQChr10g0318221' => 'han', 'HanXRQChr11g0326811' => 'han', 'HanXRQChr11g0326821' => 'han', 'HanXRQChr11g0326841' => 'han', 'HanXRQChr11g0337941' => 'han', 'HanXRQChr11g0345151' => 'han', 'HanXRQChr11g0345171' => 'han', 'HanXRQChr13g0404911' => 'han', 'HanXRQChr13g0413531' => 'han', 'HanXRQChr15g0474091' => 'han', 'HanXRQChr15g0497521' => 'han', 'HanXRQChr16g0528981' => 'han', 'HanXRQChr16g0529001' => 'han', 'HanXRQCPg0580021' => 'han', 'HanXRQCPg0580031' => 'han', 'HanXRQCPg0580051' => 'han', 'Haze_07716' => 'cav', 'Hma1.2p1_0035F.1_g021940' => 'hma', 'Hma1.2p1_0242F.1_g100623' => 'hma', 'Hma1.2p1_0242F.1_g100626' => 'hma', 'Hma1.2p1_0242F.1_g100629' => 'hma', 'Hma1.2p1_0355F.1_g133923' => 'hma', 'Hma1.2p1_0355F.1_g133926' => 'hma', 'Hma1.2p1_0861F.1_g229660' => 'hma', 'Hma1.2p1_0861F.1_g229661' => 'hma', 'Hma1.2p1_0861F.1_g229662' => 'hma', 'Hma1.2p1_0861F.1_g229663' => 'hma', 'Hma1.2p1_0861F.1_g229665' => 'hma', 'Hma1.2p1_0861F.1_g229667' => 'hma', 'Hma1.2p1_0861F.1_g229669' => 'hma', 'HPP92_022276' => 'vpl', 'HPP92_028392' => 'vpl', 'HPP92_028399' => 'vpl', 'HPP92_028409' => 'vpl', 'Hund01487' => 'sun', 'Hund03830' => 'sun', 'Hund03831' => 'sun', 'Hund04049' => 'sun', 'Hund04050' => 'sun', 'Hund04051' => 'sun', 'Hund07981' => 'sun', 'Hund07992' => 'sun', 'Hund07993' => 'sun', 'Hund08023' => 'sun', 'Hund08575' => 'sun', 'Hund08809' => 'sun', 'Hund10571' => 'sun', 'Hund10573' => 'sun', 'Hund12654' => 'sun', 'Hund15473' => 'sun', 'Hund15805' => 'sun', 'Hund19836' => 'sun', 'Hund19837' => 'sun', 'Hund19838' => 'sun', 'Hund22639' => 'sun', 'Hund22772' => 'sun', 'Hund22773' => 'sun', 'Hund22774' => 'sun', 'Hund25773' => 'sun', 'Hund25916' => 'sun', 'Hund27461' => 'sun', 'Hund27484' => 'sun', 'Hund27485' => 'sun', 'Hund27490' => 'sun', 'Hund27571' => 'sun', 'Hund27598' => 'sun', 'Hund27599' => 'sun', 'Hund27874' => 'sun', 'Hund27875' => 'sun', 'Hund27898' => 'sun', 'Hund27955' => 'sun', 'Hund27956' => 'sun', 'Hund27977' => 'sun', 'Hund27978' => 'sun', 'Hund28052' => 'sun', 'Hund28101' => 'sun', 'Hund28102' => 'sun', 'Hund28451' => 'sun', 'Hund28452' => 'sun', 'Hund28472' => 'sun', 'Hund28473' => 'sun', 'Hund28491' => 'sun', 'Hund28492' => 'sun', 'Hund28493' => 'sun', 'Hund28511' => 'sun', 'Hund28512' => 'sun', 'Hund28624' => 'sun', 'Hund28625' => 'sun', 'Hund28670' => 'sun', 'Hund28671' => 'sun', 'Hund28721' => 'sun', 'Hund28722' => 'sun', 'Hund28739' => 'sun', 'Hund28748' => 'sun', 'Hund28749' => 'sun', 'Hund28751' => 'sun', 'Hund28838' => 'sun', 'Hund28839' => 'sun', 'Hund28840' => 'sun', 'Hund28893' => 'sun', 'Hund29016' => 'sun', 'Hund29141' => 'sun', 'Hund29142' => 'sun', 'Hund29175' => 'sun', 'Hund29209' => 'sun', 'Hund29210' => 'sun', 'Hund29362' => 'sun', 'Hund29363' => 'sun', 'Hund29462' => 'sun', 'Hund29463' => 'sun', 'Hund29491' => 'sun', 'Hund29492' => 'sun', 'Hund29619' => 'sun', 'Hund29620' => 'sun', 'Hund29636' => 'sun', 'Hund29637' => 'sun', 'Hund29706' => 'sun', 'Hund29710' => 'sun', 'Hund29720' => 'sun', 'Hund29721' => 'sun', 'Hund29722' => 'sun', 'Hund29727' => 'sun', 'Hund29805' => 'sun', 'Hund29806' => 'sun', 'Hund29827' => 'sun', 'Hund29828' => 'sun', 'Hund29829' => 'sun', 'Hund29830' => 'sun', 'Hund29835' => 'sun', 'Hund29858' => 'sun', 'Hund29866' => 'sun', 'Hund29867' => 'sun', 'Hund29868' => 'sun', 'Hund29938' => 'sun', 'Hund30024' => 'sun', 'Hund30246' => 'sun', 'Hund30254' => 'sun', 'Hund30320' => 'sun', 'Hund30327' => 'sun', 'Hund30328' => 'sun', 'Hund30362' => 'sun', 'Hund30363' => 'sun', 'Hund30468' => 'sun', 'Hund30508' => 'sun', 'Hund30525' => 'sun', 'Hund30560' => 'sun', 'Hund30686' => 'sun', 'Hund30695' => 'sun', 'Hund30809' => 'sun', 'Hund30896' => 'sun', 'Hund31091' => 'sun', 'Hund31092' => 'sun', 'Hund31110' => 'sun', 'Hund31111' => 'sun', 'Lalb_Chr07g0190921' => 'lal', 'Lalb_Chr10g0102281' => 'lal', 'Lalb_Chr11g0071601' => 'lal', 'Lalb_Chr20g0115541' => 'lal', 'Lalb_Chr23g0274501' => 'lal', 'Lalb_Chr23g0274521' => 'lal', 'Lalb_Chr23g0274531' => 'lal', 'Lalb_Chr23g0274541' => 'lal', 'Lalb_Chr25g0282881' => 'lal', 'Lj1g0000993' => 'lja', 'Lj1P303T21' => 'lonja', 'Lj2A1237T126' => 'lonja', 'Lj2C1237T11' => 'lonja', 'Lj2C1237T9' => 'lonja', 'Lj2C1239G27' => 'lonja', 'Lj2C1239G28' => 'lonja', 'Lj2C1239T38' => 'lonja', 'Lj2C1239T39' => 'lonja', 'Lj2P1237T60' => 'lonja', 'Lj6g0009752' => 'lja', 'Lj8P359T12' => 'lonja', 'LjContig00318g0000728' => 'lja', 'LjContig00318g0003161' => 'lja', 'LjContig00318g0016013' => 'lja', 'Lsat_1_v5_gn_1_38720' => 'lsa', 'Lsat_1_v5_gn_2_43880' => 'lsa', 'Lsat_1_v5_gn_2_70561' => 'lsa', 'Lsat_1_v5_gn_3_113220' => 'lsa', 'Lsat_1_v5_gn_4_102681' => 'lsa', 'Lsat_1_v5_gn_4_69480' => 'lsa', 'Lsat_1_v5_gn_4_69500' => 'lsa', 'Lsat_1_v5_gn_7_100661' => 'lsa', 'Lsat_1_v5_gn_7_110220' => 'lsa', 'Lsat_1_v5_gn_7_98301' => 'lsa', 'Lsat_1_v5_gn_7_98321' => 'lsa', 'Lsat_1_v5_gn_8_144641' => 'lsa', 'Lsat_1_v5_gn_9_43721' => 'lsa', 'Lsat_1_v5_gn_9_98941' => 'lsa', 'Mapoly0002s0102' => 'mpo', 'Mapoly0018s0029' => 'mpo', 'Mapoly0068s0003' => 'mpo', 'MBI03_g00291_MAGBIO' => 'mbi', 'MCO14G322' => 'mco', 'MD02G1049400' => 'mdo', 'MD02G1049500' => 'mdo', 'MD02G1213300' => 'mdo', 'MD09G1098000' => 'mdo', 'MD11G1294800' => 'mdo', 'MD15G1388400' => 'mdo', 'Medtr0002s0680' => 'mtr', 'Medtr0002s0690' => 'mtr', 'Medtr3g077610' => 'mtr', 'Medtr3g080300' => 'mtr', 'Medtr4g005870' => 'mtr', 'Medtr4g034770' => 'mtr', 'Medtr4g050860' => 'mtr', 'Medtr5g009280' => 'mtr', 'Medtr5g019510' => 'mtr', 'Medtr5g058870' => 'mtr', 'Medtr7g111040' => 'mtr', 'MELO3C000334.2' => 'cme', 'MELO3C001225.2' => 'cme', 'MELO3C001821.2' => 'cme', 'MELO3C027106.2' => 'cme', 'MELO3C027107.2' => 'cme', 'MELO3C027978.2' => 'cme', 'MELO3C028653.2' => 'cme', 'MELO3C028654.2' => 'cme', 'MELO3C029533.2' => 'cme', 'MELO3C031612.2' => 'cme', 'MELO3C032364.2' => 'cme', 'MELO3C034228.2' => 'cme', 'MELO3C034922.2' => 'cme', 'Migut.D01360' => 'egut', 'Migut.H00990' => 'egut', 'Migut.H01166' => 'egut', 'Migut.H01167' => 'egut', 'Migut.L00565' => 'egut', 'Nitab4.5_0000138g0260' => 'nta', 'Nitab4.5_0000342g0250' => 'nta', 'Nitab4.5_0001170g0080' => 'nta', 'Nitab4.5_0003644g0070' => 'nta', 'Nitab4.5_0004697g0020' => 'nta', 'Nitab4.5_0004697g0050' => 'nta', 'Nitab4.5_0007104g0010' => 'nta', 'Nitab4.5_0007680g0030' => 'nta', 'Nitab4.5_0008639g0040' => 'nta', 'Nitab4.5_0009663g0040' => 'nta', 'Nitab4.5_0009663g0050' => 'nta', 'Nitab4.5_0009663g0060' => 'nta', 'Nitab4.5_0010235g0030' => 'nta', 'Nn010s41432' => 'nnu', 'Nn010s41435' => 'nnu', 'Nn010s41440' => 'nnu', 'Nn010s41444' => 'nnu', 'Nn010s41447' => 'nnu', 'Nn021s41539' => 'nnu', 'Nn1g00306' => 'nnu', 'Nn1g04062' => 'nnu', 'Nn1g04419' => 'nnu', 'Nn1g07435' => 'nnu', 'Nn1g07561' => 'nnu', 'Nn265s45952' => 'nnu', 'Nn265s45953' => 'nnu', 'Nn265s45955' => 'nnu', 'Nn2g12581' => 'nnu', 'Nn2g14968' => 'nnu', 'Nn3g16863' => 'nnu', 'Nn3g19983' => 'nnu', 'Nn3g19984' => 'nnu', 'Nn3g21288' => 'nnu', 'Nn8g40223' => 'nnu', 'Oeu012807.1' => 'oeu', 'Oeu012808.1' => 'oeu', 'Oeu027076.1' => 'oeu', 'Oeu028777.1' => 'oeu', 'Oeu028778.1' => 'oeu', 'Oeu029284.1' => 'oeu', 'Oeu062853.1' => 'oeu', 'Peaxi162Scf00021g00087' => 'pax', 'Peaxi162Scf00021g00088' => 'pax', 'Peaxi162Scf00021g00818' => 'pax', 'Peaxi162Scf00021g00819' => 'pax', 'Peaxi162Scf00041g00229' => 'pax', 'Peaxi162Scf00068g00152' => 'pax', 'Peaxi162Scf00413g00828' => 'pax', 'Peaxi162Scf00937g00111' => 'pax', 'Peaxi162Scf01064g00230' => 'pax', 'PGR111G0026' => 'pgr', 'PGR111G0079' => 'pgr', 'PGR111G0098' => 'pgr', 'PGSC0003DMG400002905' => 'stu', 'PGSC0003DMG400010974' => 'stu', 'Phvul.001G117600' => 'pvu', 'Phvul.002G278104' => 'pvu', 'Phvul.002G278112' => 'pvu', 'Phvul.002G278116' => 'pvu', 'Phvul.006G066900' => 'pvu', 'Potri.005G150200' => 'ptr', 'Potri.013G162200' => 'ptr', 'Potri.013G162400' => 'ptr', 'Potri.013G162600' => 'ptr', 'Potri.016G094067' => 'ptr', 'Potri.016G094201' => 'ptr', 'Prupe.7G029700' => 'ppe', 'Psat0s1152g0040' => 'psa', 'Psat0s1586g0200' => 'psa', 'Psat0s1586g0240' => 'psa', 'Psat0s1586g0280' => 'psa', 'Psat0s2288g0120' => 'psa', 'Psat0s2288g0160' => 'psa', 'Psat0s2288g0240' => 'psa', 'Psat0s2754g0120' => 'psa', 'Psat0s2754g0160' => 'psa', 'Psat0s389g0040' => 'psa', 'Psat0s415g0040' => 'psa', 'Psat0s6989g0080' => 'psa', 'Psat0s6989g0120' => 'psa', 'Psat2g111000' => 'psa', 'Psat2g111040' => 'psa', 'Psat4g084400' => 'psa', 'Psat5g134800' => 'psa', 'Psat5g134840' => 'psa', 'Psat5g286200' => 'psa', 'Psat5g286240' => 'psa', 'Psat6g140480' => 'psa', 'Psat6g140520' => 'psa', 'Psat6g140560' => 'psa', 'PSO017G2075' => 'pso', 'PSO548G0038' => 'pso', 'PSO548G0072' => 'pso', 'PSO548G0093' => 'pso', 'QL93p0311_0014' => 'qlo', 'QL93p0311_0018' => 'qlo', 'QL93p1043_0001' => 'qlo', 'QL93p1043_0003' => 'qlo', 'RcHm_v2.0_Chr5g0042981' => 'rch', 'RcHm_v2.0_Chr5g0042991' => 'rch', 'RcHm_v2.0_Chr6g0281331' => 'rch', 'RcHm_v2.0_Chr6g0281341' => 'rch', 'RcHm_v2.0_CPg0502071' => 'rch', 'RcHm_v2.0_CPg0502091' => 'rch', 'RcHm_v2.0_CPg0502101' => 'rch', 'RhsimPtG0003100' => 'rsi', 'Sabra10G0056300' => 'sbr', 'SabraPtG0003400' => 'sbr', 'SalBow1G4044' => 'sbo', 'Sc03g0005200' => 'sci', 'Sc03g0009990' => 'sci', 'Sc03g0010010' => 'sci', 'Sc04g0004720' => 'sci', 'Sc10g0007010' => 'sci', 'Sc22g0003430' => 'sci', 'Sc22g0003440' => 'sci', 'Sc23g0003920' => 'sci', 'Sed0009930' => 'sed', 'Sed0010807' => 'sed', 'Sed0015006' => 'sed', 'Sed0016391' => 'sed', 'Sed0018679' => 'sed', 'Sed0021403' => 'sed', 'Sed0022556' => 'sed', 'Sed0026664' => 'sed', 'SEGI_00879' => 'sgi', 'SEGI_02123' => 'sgi', 'SEGI_02422' => 'sgi', 'SEGI_03619' => 'sgi', 'SEGI_04460' => 'sgi', 'SEGI_09140' => 'sgi', 'SEGI_09273' => 'sgi', 'SEGI_09545' => 'sgi', 'SEGI_10138' => 'sgi', 'SEGI_10263' => 'sgi', 'SEGI_13178' => 'sgi', 'SEGI_16403' => 'sgi', 'SEGI_19385' => 'sgi', 'SEGI_19993' => 'sgi', 'SEGI_20028' => 'sgi', 'SEGI_23639' => 'sgi', 'SEGI_25777' => 'sgi', 'SEGI_26932' => 'sgi', 'SEGI_28780' => 'sgi', 'SEGI_30070' => 'sgi', 'SEGI_31685' => 'sgi', 'SEGI_36101' => 'sgi', 'SEGI_38984' => 'sgi', 'SEGI_39120' => 'sgi', 'SEGI_40898' => 'sgi', 'SGA_v2.0_scaffold15G07220' => 'sas', 'SGA_v2.0_scaffold213G42216' => 'sas', 'SGA_v2.0_scaffold255G45490' => 'sas', 'SGA_v2.0_scaffold400G50898' => 'sas', 'SGA_v2.0_scaffold420G51342' => 'sas', 'SGA_v2.0_scaffold479G52251' => 'sas', 'SGA_v2.0_scaffold4G02447' => 'sas', 'SGA_v2.0_scaffold77G25330' => 'sas', 'SGA_v2.0_scaffold781G53597' => 'sas', 'SMO086G0009' => 'smo', 'SMO086G0044' => 'smo', 'SMO364G0525' => 'smo', 'Solyc00g500019.1' => 'sly', 'Solyc00g500020.1' => 'sly', 'Solyc00g500065.1' => 'sly', 'Solyc00g500066.1' => 'sly', 'Solyc00g500067.1' => 'sly', 'Solyc01g017200.2' => 'sly', 'Solyc02g032810.1' => 'sly', 'Solyc04g039810.1' => 'sly', 'Solyc04g039820.3' => 'sly', 'Solyc04g039830.3' => 'sly', 'Solyc05g023720.1' => 'sly', 'Solyc09g091410.2' => 'sly', 'Solyc10g045220.1' => 'sly', 'Sopen00g002530' => 'spe', 'Sopen01g024880' => 'spe', 'Sopen04g010000' => 'spe', 'Sopen07g002120' => 'spe', 'Sopen11g014300' => 'spe', 'TAR369G0053' => 'tar', 'TAR371G0631' => 'tar', 'Thhalv10010960m.g' => 'esa', 'Thhalv10011034m.g' => 'esa', 'Thhalv10011116m.g' => 'esa', 'Thhalv10022514m.g' => 'esa', 'Thhalv10026888m.g' => 'esa', 'TPR.G16839' => 'tpr', 'TPR.G2628' => 'tpr', 'unitig_91.g26508' => 'ugi', 'unitig_91.g26509' => 'ugi', 'vmacro13610' => 'vma', 'vmacro13611' => 'vma', 'vmacro18167' => 'vma', 'vmacro18617' => 'vma', 'vmacro22411' => 'vma', 'VMungo0251G1963' => 'vmu', 'VMungo0586G0001' => 'vmu', 'VMungo0586G0002' => 'vmu', 'Zm00001eb039160' => 'zma', 'Zm00001eb105240' => 'zma', 'Zm00001eb255910' => 'zma', 'Zm00001eb434900' => 'zma', 'Zm00001eb435070' => 'zma', 'Zm00001eb435170' => 'zma', 'Zm00001eb435380' => 'zma', 'Zm00001eb436740' => 'zma', 'Zm00001eb437180' => 'zma', 'Zm00001eb441430' => 'zma' ) $gf_id = 'HOM05D000806' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000806' ) $data_identifier = 'HOM05D000806' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 1, 'amhyb' => (int) 11, 'aly' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 4, 'bol' => (int) 34, 'bra' => (int) 18, 'can' => (int) 25, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 1, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 1, 'camsi' => (int) 1, 'dca' => (int) 3, 'din' => (int) 1, 'dzi' => (int) 1, 'eca' => (int) 4, 'bvu' => (int) 13, 'egr' => (int) 7, 'fan' => (int) 2, 'gma' => (int) 4, 'ghi' => (int) 30, 'gra' => (int) 17, 'vvi' => (int) 3, 'han' => (int) 46, 'cav' => (int) 1, 'hma' => (int) 13, 'vpl' => (int) 4, 'sun' => (int) 120, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 11, 'cme' => (int) 13, 'egut' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 21, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppe' => (int) 1, 'psa' => (int) 23, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 2, 'sbo' => (int) 1, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 25, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 13, 'spe' => (int) 5, 'tar' => (int) 2, 'esa' => (int) 5, 'tpr' => (int) 2, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb441430' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1